ammawla/encode-toolkit
Overview
An MCP server and Claude Plugin for the ENCODE Project, enabling search, download, tracking, and analysis of functional genomics experiments.
Capabilities
- • prompt templates
- • database integration
- • github integration
- • mcp client integration
- • workflow automation support
Best For
MCP server and Claude Plugin for ENCODE Project genomic data: search, download, track, and analyze functional genomics experiments.
Decision Snapshot
Install
detected in docs
Usage
detected in docs
Docs
8 links
Config
3 strong hints
Capabilities
5 key capabilities detected
- • GitHub stars: 4
- • Forks: 4
- • Source provenance count: 1
- • Last seen: 4/15/2026
- • Published: 3/16/2026
Features
- • *"What GWAS variants overlap islet enhancers?"*
- • *"Check ClinVar pathogenicity for rs7903146"*
- • *"Pull GTEx expression for TCF7L2 across tissues"*
- • *"Find JASPAR motifs for HNF4A binding sites"*
- • prompt templates
- • database integration
- • github integration
- • mcp client integration
Use Cases
- • Supports capabilities such as: prompt templates; database integration; github integration.
- • Common usage themes: mcp, curated, markdown-list, awesome-mcp-servers-punkpeye.
Supported Clients / Integrations
- • prompt templates
- • database integration
- • github integration
- • mcp client integration
- • workflow automation support
Compatibility Signals
- • Claude Desktop: mentions (Mentioned in approved metadata/docs evidence.)
- • GitHub: supports (Detected in parser config/capability hints.)
Notes / Requirements
- • Primary language: Python
- • License: AGPL-3.0
- • Documentation coverage: high
- • Parser coverage score: 1.00
- • Source feeds: Awesome MCP Servers (punkpeye)
- • Topic cluster: research
Official Links
Source Information
You can verify all information on this page against the source repository above.
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What To Do Next
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